Universidad de Jaén

Facultad de Ciencias Experimentales

Departamento de Biología Experimental

Área de Genética

Instituto Universitario de Investigación en Olivar y Aceites de Oliva (INUO),

 

 
 
Principal

Personal

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Francisco Luque Vázquez

Departamento de Biología Experimental

Edificio B-3, 3ª Planta. Campus Las Lagunillas s/n. 23071 - Jaén
 

Tlf: 953 212527

Fax: 953 21 18 75

fjluque@ ujaen.es

 

 
 

Francisco Navarro Gómez

Departamento de Biología Experimental

Edificio B-3, 3ª Planta. Campus Las Lagunillas s/n. 23071 - Jaén
 

Tlf: 953 212771

Fax: 953 21 18 75

fngomez@ ujaen.es

 

 

Jorge Pérez Fernández

Departamento de Biología Experimental

Edificio B-3, 2ª Planta. Campus Las Lagunillas s/n. 23071 - Jaén
 

Tlf: 953 212754

Fax: 953 21 18 75

jpfernan@ ujaen.es

 

 

 

 

Publicaciones más relevantes

Gutiérrez-Santiago, F., Martinez-Fernández, V., F. Garrido-Godino, Colino-Palomino, C. Clemente-Banco, A., Conesa, C., Acker, J. and Navarro, F., 2024. Maf1 phosphorylation is regulated through the action of prefoldin-like Bud27 on PP4 phosphatase in Saccharomyces cerevisiae. NAR. https://doi.org/10.1093/nar/gkae414.

Serrano, A.; Moret, M.; Fernández-Parras, I.; Bombarely, A.; Luque, F.; Navarro, F. (2024) RNA Polymerases IV and V Are Involved in Olive Fruit Development. Genes, 15, 1. https://doi.org/10.3390/genes15010001.        

Garrido-Godino, A.I., Gupta, I., Pelechano, V. and Navarro, F. (2024) RNA Pol II Assembly Affects ncRNA Expression. International Journal of Molecular Sciences 25, 507. doi:10.3390/ijms25010507.

Cuevas-Bermudez, A., Martinez-Fernandez, V., Garrido-Godino, A.I., Jordan-Pla, A., Penate, X., Martin-Exposito, M., Gutierrez, G., Govind, C.K., Chavez, S., Pelechano, V. and Navarro, F. (2023) The association of the RSC remodeler complex with chromatin is influenced by the prefoldin-like Bud27 and determines nucleosome positioning and polyadenylation sites usage in Saccharomyces cerevisiae. Biochimica et biophysica acta. Gene regulatory mechanisms, 194995.doi: 10.1016/j.bbagrm.2023.194995.

 FernÃández-Fernández J, Martín-Villanueva S, Perez-Fernandez J, de la Cruz J. (2023) The Role of Ribosomal Proteins eL15 and eL36 in the Early Steps of Yeast 60S Ribosomal Subunit Assembly. J Mol Biol. 2023 Oct 20;435(24):168321. doi: 10.1016/j.jmb.2023.168321. Epub ahead of print. PMID: 37865285.

A. Bombarely, J. Friel and F. Luque (2023) Olive genome structure, evolution and domestication. In The Olive – Botany and production, eds. L. Baldoni, T. Caruso and F. Famini. pp.: 121-130. https://doi.org/10.1079/9781789247350.0000.

Serrano, A., Rodríguez-Jurado, D., RamÃírez-Tejero, J.A., Luque, F., López-Escudero, F.J., Belaj, A., Román, B., León, L. (2023) Response to Verticillium dahliae infection in a genetically diverse set of olive cultivars. Scientia Horticulturae, 316, 112008. https://doi.org/10.1016/j.scienta.2023.112008.

Gutiérrez-Santiago, F. and Navarro, F., (2023). Transcription by the Three RNA Polymerases under the Control of the TOR Signaling Pathway in Saccharomyces cerevisiae. Biomolecules 13, 642. doi:10.3390/biom13040642

Bullones, A.; Castro, A.J.; Lima-Cabello, E.; Alché, J.d.D.; Luque, F.; Claros, M.G.; Fernández-Pozo, N. (2023) OliveAtlas: A Gene Expression Atlas Tool for Olea europaeaPlants12, 1274. https://doi.org/10.3390/plants12061274.

Moret, M.; Ramírez-Tejero, J.A.; Serrano, A.; Ramírez-Yera, E.; Cueva-López, M.D.; Belaj, A.; León, L.; Rosa, R.d.l.; Bombarely, A.; Luque, F. (2023) Identification of Genetic Markers and Genes Putatively Involved in Determining Olive Fruit Weight. Plants12, 155. https://doi.org/10.3390/plants12010155. 

Garrido-Godino, A.I., Martin-Exposito, M., Gutierrez-Santiago, F., Perez-Fernandez, J. and Navarro, F., (2022). Rpb4/7, a key element of RNA pol II to coordinate mRNA synthesis in the nucleus with cytoplasmic functions in Saccharomyces cerevisiae. Biochim Biophys Acta Gene Regul Mech 1865, 194846. https://doi.org/10.1016/j.bbagrm.2022.194846.

J. Mercado-Blanco, A. J. Fernández-González, M. Cardoni, C. Gómez-Lama Cabanás, F. Luque y M. Fernández-López (2022) El holobionte olivo: relación entre microbioma y tolerancia a estreses. Phytoma-España343.

Garrido-Godino A.I., Cuevas-Bermúdez A., Gutiérrez-Santiago F., Mota-Trujillo M.C.  and Navarro F (2022) The Association of Rpb4 with RNA Polymerase II Depends on CTD Ser5P Phosphatase Rtr1 and Influences mRNA Decay in Saccharomyces cerevisiae. Int. J. Mol. Sci. 2022, 23, 2002. https://doi.org/10.3390/ijms23042002.

Gutiérrez-Santiago, F., Cintas-Galán, M., Martín-Expósito, M., del Carmen Mota-Trujillo, M., Cobo-Huesa, C., Perez-Fernandez, J. and Navarro Gómez, F., (2022). A High-Copy Suppressor Screen Reveals a Broad Role of Prefoldin-like Bud27 in the TOR Signaling Pathway in Saccharomyces cerevisiae. Genes 13, 748.

Friel, J.; Bombarely, A.; Fornell, C.D.; Luque, F.; Fernández-Ocaña, A.M. (2021) Comparative Analysis of Genotyping by Sequencing and Whole-Genome Sequencing Methods in Diversity Studies of Olea europaea L. Plants, 10, 2514. https://doi.org/10.3390/plants10112514.

F. Luque (2021) Descifrando el genoma del olivo. revista: Aldaba, 49:125-131. (I.S.S.N. 1137-9173)

A. J. Fernández-González, J. A. Ramírez-Tejero, M. P. Nevado-Berzosa, F. Luque, M. Fernández-López, J. Mercado-Blanco (2021) Coupling the endophytic microbiome with the host transcriptome in olive roots. Computational and Structural Biotechnology Journal, 19:4777-4789; https://doi.org/10.1016/j.csbj.2021.08.035.

Fernández-Parras I., Ramírez-Tejero J.A., Luque F. and Navarro F. (2021) Several isoforms for each RNA polymerases common subunit are differentially expressed in the cultivated olive tree (Olea europaea L.). Front. Mol. Biosci., 8, 679292.doi: 10.3389/fmolb.2021.679292. Incluido en e-book (ISBN 978-2-8897-4114-4).

Calvo O, Ansari A and Navarro F (2021) Editorial: The Lesser Known World of RNA Polymerases. Front. Mol. Biosci. 8:811413. doi: 10.3389/fmolb.2021.811413.Incluido en e-book (ISBN 978-2-8897-4114-4)

González-Jiménez A, Campos A, Navarro F, Clemente-Blanco A and Calvo O (2021) Regulation of Eukaryotic RNAPs Activities by Phosphorylation. Front. Mol. Biosci. 8:681865. doi: 10.3389/fmolb.2021.681865.Incluido en e-book (ISBN 978-2-8897-4114-4)

J. A. Ramírez-Tejero, J. Jiménez-Ruiz, A. Serrano, A. Belaj, L. León, R. de la Rosa, J. Mercado-Blanco, F. Luque (2021) Verticillium wilt resistant and susceptible olive cultivars express a very different basal set of genes in roots. BMC Genomics, 22:229; doi:10.1186/s12864-021-07545-x.

Garrido-Godino,A.I., Gutiérrez-Santiago, F. and Navarro F. (2021) Biogenesis of RNA polymerases in yeast. Frontiers in Molecular Biosciences 8:669300. doi: 10.3389/fmolb.2021.669300.Incluido en e-book (ISBN 978-2-8897-4114-4)

 

Lesage, E., Perez-Fernandez, J., Queille, S., Dez, C., Gadal, O., and Kwapisz, M. (2021) Non-Coding, RNAPII-Dependent Transcription at the Promoters of rRNA Genes Regulates Their Chromatin State in S. cerevisiae. Non-coding Rna. 7, 41

Garrido-Godino, A.I., Gupta, I., Gutiérrez-Santiago, F. Martínez-Padilla, A.B., Alekseenko, A., Steinmetz L.M. , Pérez-Ortín, J.E., Pelechano, V. and Navarro F. (2020) Rpb4 and Puf3 imprint and post-transcriptionally control the stability of a common set of mRNAs in yeast. RNA Biology; doi: 10.1080/15476286.2020.1839229.

Ramírez-Tejero, J. A.; Gómez-Lama Cabanás, C.; Valverde-Corredor, A.; Mercado-Blanco, J.; F. Luque (2020) Epigenetics regulation of Verticillium dahliae virulence: Does DNA methylation level play a role? International Journal of Molecular Sciences,  21, 5197; doi:10.3390/ijms21155197. 

Faize, M., Fumanal, B., Luque, F., Tejero, J. A., Zou, Z., Qiao, X., Faize, L., Gousset-Dupont, A., Roeckel-Drevet, P., Label, P., Venisse, J-S (2020) Genome wild analysis and molecular understanding of the aquaporin diversity in Olive trees (Olea europaea L.) International Journal of Molecular Sciences, 21, 4183; doi:10.3390/ijms21114183.

Verónica Martínez-Fernández, Abel Cuevas-Bermúdez, Francisco Gutiérrez-Santiago, Ana I. Garrido-Godino, Olga Rodríguez-Galán, Antonio Jordán-Pla, Sergio Lois, Juan C. Triviño, Jesús de la Cruz, and Francisco Navarro (2020). Prefoldin-like Bud27 influences the transcription of ribosomal components and ribosome biogenesis in Saccharomyces cerevisiae. RNA doi: 10.1261/rna.075507.120.

Ramírez-Tejero, J. A.; Jiménez-Ruiz, J.; Leyva-Pérez, M. de la O.; Barroso, J. B.; Luque F. (2020) Gene expression pattern in olive tree organs (Olea europaea L.). Genes, 11, 544; doi:10.3390/genes11050544.

Jiménez-Ruiz, J.; Ramírez-Tejero, J.A.; Fernández-Pozo, N.; Leyva-Pérez, M. de la O.; Yan, H.; de la Rosa, R.; Belaj, A.; Montes, E.; Rodríguez-Ariza, M.O.; Navarro, F.; Barroso, J.B.; Beuzón, C.R.; Valpuesta, V.; Bombarely, A.; Luque F. (2020) Transposon Activation is a Major Driver in the Genome Evolution of Cultivated Olive Trees (Olea europaea L.). The Plant Genome, e20010. https://doi.org/10.1002/tpg2.20010.

 Cuevas-Bermúdez, A., Garrido-Godino, A. I., Gutiérrez-Santiago, F. and Navarro, F. (2020). A Yeast Chromatin-enriched Fractions Purification Approach, yChEFs, from Saccharomyces cerevisiaeBio-protocol 10(1): e3471. DOI: 10.21769/BioProtoc.3471.

Begley, Victoria; Corzo, Daniel; Jordán-Pla, Antonio,; Cuevas-Bermúdez, Abel; de Miguel, Maria; Pérez-Aguado, David; Machuca-Ostos, Mercedes; Navarro, Francisco; Chávez, María; Pérez-Ortín, José; Chavez, Sebastian (2019). The mRNA degradation factor Xrn1 regulates transcription elongation in parallel to Ccr4. Nucleic Acids Research. doi:10.1093/nar/gkz660.

Cuevas-Bermúdez A, Garrido-Godino AI and Navarro F (2019). A novel yeast chromatin-enriched fractions purification approach, yChEFs, for the chromatin-associated protein analysis used for chromatin-associated and RNA-dependent chromatin-associated proteome studies from Saccharomyces cerevisiae. Gene Reports, 16. doi: 10.1016/j.genrep.2019.100450.

J. Jiménez-Ruiz, M. de la O Leyva-Pérez, C. Gómez-Lama Cabanás, J. B. Barroso, F. Luque, J. Mercado-Blanco (2019) The transcriptome of Verticillium dahliae responds differentially depending on the disease susceptibility level of the olive (Olea europaea L.) cultivar. Genes, 10, 251.

Braun, C. M., Hackert, P., Schmid, C. E., Bohnsack, M. T., Bohnsack, K. E., and Perez-Fernandez, J. (2019) Pol5 is required for recycling of small subunit biogenesis factors and for formation of the peptide exit tunnel of the large ribosomal subunit. Nucleic Acids Res. 48, 405–420

Martinez-Fernandez, V., A. I. Garrido-Godino, Cuevas-Bermúdez A. and Navarro F. (2018). The Yeast Prefoldin Bud27. Advances in Experimental Medicine and Biology. 1106:109-118. doi: 10.1007/978-3-030-00737-9_8

Verónica Martínez-Fernández and Francisco Navarro (2018) Rpb5, a subunit shared by the eukaryotic RNA polymerases cooperates with the prefoldin-like Bud27/URI. AIMS

Verónica Martínez-Fernández, Ana Isabel Garrido-Godino1, María Carmen Mirón-García, Victoria Begley, Antonio Fernández-Pévida , Jesús de la Cruz, Sebastián Chávez, and Francisco Navarro (2018). Rpb5 modulates the RNA polymerase II transition from initiation to elongation by influencing Spt5 association and backtracking. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms   1861(1):1-13. doi: 10.1016/j.bbagrm.2017.11.002.

M. de la O Leyva-Pérez, J. Jiménez-Ruiz, C. Gómez-Lama Cabanás, A. Valverde-Corredor, J. B. Barroso, F. Luque, J. Mercado-Blanco (2018). Tolerance of olive (Olea europaea L.) cv. Frantoio to Verticillium dahliae relies on both basal and pathogen-induced differential transcriptomic responses. New Phytologist, 217: 671–686, DOI: 10.1111/nph.14833.

J. Jiménez-Ruiz, M. de la O Leyva-Pérez, E. Schilirò, J. B. Barroso, A. Bombarely, L. Mueller, J. Mercado-Blanco, F. Luque (2017) Transcriptomic analysis of the Olea europaea L. roots during the Verticillium dahliae early infection process. The Plant Genome, 10 (1): 1-15, DOI: 10.3835/plantgenome2016.07.0060.

Boissier, F., Schmidt, C. M., Linnemann, J., Fribourg, S., and Perez-Fernandez, J. (2017) Pwp2 mediates UTP-B assembly via two structurally independent domains. Sci Rep-uk. 7, 3169

Ana I Garrido-Godino; María Carmen García-López; José García-Martínez; Vicent pelechano; Daniel Medina; José Enrique Pérez-Ortín; Francisco Navarro (2016). Rpb1 foot mutations demonstrate a major role of Rpb4 in mRNA stability during stress situations in yeast BBA GRM 1859: 731-743. doi: 10.1016/j.bbagrm.2016.03.008).

C. Mata-Pérez, B. Sánchez-Calvo, M. N. Padilla, J. C. Begara-Morales, F. Luque, M. Melguizo, J. Jiménez-Ruiz, J. Fierro-Risco, J. C. Domínguez-Romero, A. Peñas-Sanjuan, R. Valderrama, F. J. Corpas, J. B. Barroso (2016) Nitro-fatty acids in plant signaling: nitro-linolenic acid induces the molecular chaperone network in Arabidopsis. Plant Physiology, 170: 686-701.

J. J. Gonzalez-Plaza, I. Ortiz-Martín, A. Muñoz-Mérida, C. García-López, J. F. Sánchez-Sevilla, F. Luque, O. Trelles-Salazar, E. Rodríguez-Bejarano, R. de la Rosa, V. Valpuesta, C. Beuzón-López (2016) Transcriptomic analysis using olive varieties and breeding progenies identify candidate genes involved in plant architecture. Frontiers in Plant Science, 7 (240): 1-21.   

M. Leterrier, J. B. Barroso, R. Valderrama, J. C. Begara-Morales, B. Sánchez-Calvo, M. Chaki, F. Luque, B. Viñegla, J. M. Palma, F. J. Corpas (2016) Peroxisomal NADP-isocitrate dehydrogenase is required for Arabidopsis stomatal movement. Protoplasma,253: 403-415.

Bruckmann, A., Linnemann, J., and Perez-Fernandez, J. (2016) Purification of RNA Polymerase I-Associated Chromatin from Yeast Cells. Methods in molecular biology (Clifton, N.J.). 1455, 213–23

J. Jiménez-Ruiz, M. C. García-López, I. Vidoy, M. de la O Leyva-Pérez, A. Fernández-Ocaña, J. B. Barroso, A. Barceló, C. R. Beuzón, R. de la Rosa, F. Luque (2015) Transcriptional analysis of adult cutting and juvenile seedling olive roots. Tree Genetics and Genomes  , 11: 77-88.

Verónica Martínez-Fernández, Ana Isabel Garrido-Godino, Abel Cuevas-Bermúdez and Francisco Navarro (2015) Cytoplasmic and Nuclear Functions for the Prefoldin-like URI/Bud27. En New Research On Molecular Chaperones. Nova Science Publishers, Inc.. doi: 10.1387/ijdb.140224fh.

C. Mata-Pérez, J. C. Begara-Morales, F. Luque, M. N. Padilla, J. Jiménez-Ruiz, B. Sánchez-Calvo, J. Fierro-Risco, J. B. Barroso (2015) Transcriptomic Analyses on the Role of Nitric Oxide in Plant Disease Resistance. Current Issues in Molecular Biology, 19: 121-128.

J. C. Begara-Morales, B. Sánchez-Calvo, M. Chaki, C. Mata-Pérez, R. Valderrama, J. López-Jaramillo, F. Luque, F. J. Corpas, J. B. Barroso (2015) Differential molecular response of monodehydroascorbate reductase (MDAR) and glutathione reductase (GR) to nitric oxide post-translational modifications caused by nitration and S-nitrosylation. Journal of Experimental Botany, en prensa (doi:10.1093/jxb/erv306).

Francisco Hernandez-Torres, Diego Franco, Amelia E. Aránega and Francisco Navarro. Expression patterns and immunohistochemical localization of PITX2B transcription factor in the developing mouse heart (2015) Int. J. Dev. Biol. doi: 10.1387/ijdb.140224fh.

C. Mata-Pérez, B. Sánchez-Calvo, J. C. Begara-Morales, F. Luque, J. Jiménez-Ruiz, M. Padilla, J. Fierro-Risco, R. Valderrama, A. Fernández Ocaña, F. J. Corpas, J. B. Barroso (2015) Transcriptomic profiling of linolenic acid-responsive genes in ROS signalling from RNA-seq data in Arabidopsis. Frontiers in Plant Science, 6: 1-14.

Leyva-Pérez M de L, Valverde-Corredor A, Valderrama R, Jiménez-Ruiz J, Muñoz-Merida A, Trelles O, Barroso JB, Mercado-Blanco J, Luque F (2015) Early and delayed long-term transcriptional changes and short-term transient responses during cold acclimation in olive leaves. DNA Res. 22(1):1-11. doi: 10.1093/dnares/dsu033.

Paula Allepuz-Fuster, Verónica Martínez-Fernández, Ana I. Garrido-Godino, Sergio Alonso-Aguado, Steven D. Hanes, Francisco Navarro  and Olga Calvo (2014) Rpb4/7 facilitates RNA polymerase II CTD dephosphorylation. Nuclei Acids Research, 42(22):13674-88.

Mirón-García MC, Garrido-Godino AI, Martínez-Fernández V, Fernández-Pevida A, Cuevas-Bermúdez a, Chávez S, de la Cruz J and Navarro F (2014). The yeast URI-ortologue Bud27 associates with the RSC nucleosome remodeller and modulates transcription. Nuclei Acids Research, 42(15): 9666-9676.

M. C. García-López, I. Vidoy, J. Jiménez-Ruiz, A. Muñoz-Mérida, A. Fernández-Ocaña, R. de la Rosa, J. B. Barroso, F. Navarro, O. Trelles, C. R. Beuzón, A. Barceló, V. Valpuesta, F. Luque (2014) Genetic changes involved in the juvenile-to-adult transition in the shoot apex of Olea europaea L. occurs years before the first flowering. Tree Genetics and Genomes, 10: 585-603.      

J. C. Begara-Morales, B. Sánchez-Calvo, F. Luque, M. Leterrier, Mª de la O Leyva-Pérez, F. J. Corpas, J. B. Barroso (2014)  Differential transcriptomic analysis by RNA-seq of GSNO-responsive genes between Arabidopsis roots and leaves. Plant and Cell Physiology, 55: 1080–1095.

Hamperl, S., Brown, C. R., Perez-Fernandez, J., Huber, K., Wittner, M., Babl, V., Stöckl, U., Boeger, H., Tschochner, H., Milkereit, P., and Griesenbeck, J. (2014) Purification of specific chromatin domains from single-copy gene loci in Saccharomyces cerevisiae. Methods in molecular biology (Clifton, N.J.). 1094, 329–41.

Pöll, G., Li, S., Ohmayer, U., Hierlmeier, T., Milkereit, P., and Perez-Fernandez, J. (2014) In vitro reconstitution of yeast tUTP/UTP A and UTP B subcomplexes provides new insights into their modular architecture. PloS one. 9, e114898.

Hamperl, S., Brown, C. R., Garea, A. V., Perez-Fernandez, J., Bruckmann, A., Huber, K., Wittner, M., Babl, V., Stoeckl, U., Deutzmann, R., Boeger, H., Tschochner, H., Milkereit, P., and Griesenbeck, J. (2014) Compositional and structural analysis of selected chromosomal domains from Saccharomyces cerevisiae. Nucleic Acids Res. 42, e2–e2.

Merkl, P., Perez-Fernandez, J., Pilsl, M., Reiter, A., Williams, L., Gerber, J., Böhm, M., Deutzmann, R., Griesenbeck, J., Milkereit, P., and Tschochner, H. (2014) Binding of the termination factor Nsi1 to its cognate DNA site is sufficient to terminate RNA polymerase I transcription in vitro and to induce termination in vivo. Molecular and cellular biology. 34, 3817–27

Garrido-Godino AI, Garcia-Lopez MC, Navarro F. (2013) Correct assembly of the RNA polymerase II depends on the foot domain and is required for multiple steps of transcription in Saccharomyces cerevisiae  Mol Cell Biol. 33:3611-3626

F. J. Corpas, M. Leterrier, J. Begara-Morales, R. Valderrama, M. Chaki, F. López-Jaramillo, F. Luque, J. M. Palma, M. Padilla, B. Sánchez-Calvo, C. Mata-Pérez, J.B. Barroso (2013) Inhibition of peroxisomal hydroxypyruvate reductase (HPR1) by tyrosine nitration. Biochimica et Biophysica Acta - General Subjects  , 1830:4981-4989.

Mirón-García MC, Garrido-Godino AI, García-Molinero V, Hernández-Torres F, Rodrıíguez-Navarro S, and Navarro F (2013) The Prefoldin Bud27 Mediates the Assembly of the Eukaryotic RNA Polymerases in an Rpb5-Dependent Manner. PLoS Genet, 9 (2):e1003297.doi:10.1371/journal.pgen.1003297.

Hamperl, S., Wittner, M., Babl, V., Perez-Fernandez, J., Tschochner, H., and Griesenbeck, J. (2013) Chromatin states at ribosomal DNA loci. Biochimica et biophysica acta. 1829, 405–17.

 Nonnekens, J., Perez-Fernandez, J., Theil, A. F., Gadal, O., Bonnart, C., and Giglia-Mari, G. (2013) Mutations in TFIIH causing trichothiodystrophy are responsible for defects in ribosomal RNA production and processing. Human Molecular Genetics. 22, 2881–2893.

Németh, A., Perez-Fernandez, J., Merkl, P., Hamperl, S., Gerber, J., Griesenbeck, J., and Tschochner, H. (2013) RNA polymerase I termination: Where is the end? Biochimica et biophysica acta. 1829, 306–17.

Hierlmeier, T., Merl, J., Sauert, M., Perez-Fernandez, J., Schultz, P., Bruckmann, A., Hamperl, S., Ohmayer, U., Rachel, R., Jacob, A., Hergert, K., Deutzmann, R., Griesenbeck, J., Hurt, E., Milkereit, P., Baßler, J., and Tschochner, H. (2013) Rrp5p, Noc1p and Noc2p form a protein module which is part of early large ribosomal subunit precursors in S. cerevisiae. Nucleic Acids Res. 41, 1191–1210.

Albert, B., Colleran, C., Léger-Silvestre, I., Berger, A. B., Dez, C., Normand, C., Perez-Fernandez, J., McStay, B., and Gadal, O. (2013) Structure-function analysis of Hmo1 unveils an ancestral organization of HMG-Box factors involved in ribosomal DNA transcription from yeast to human. Nucleic acids research. 41, 10135–49.

Ohmayer, U., Gamalinda, M., Sauert, M., Ossowski, J., Pöll, G., Linnemann, J., Hierlmeier, T., Perez-Fernandez, J., Kumcuoglu, B., Leger-Silvestre, I., Faubladier, M., Griesenbeck, J., Woolford, J., Tschochner, H., and Milkereit, P. (2013) Studies on the assembly characteristics of large subunit ribosomal proteins in S. cerevisae. PloS one. 8, e68412.

Regot, S., Nadal, E. de, Rodríguez-Navarro, S., González-Novo, A., Pérez-Fernandez, J., Gadal, O., Seisenbacher, G., Ammerer, G., and Posas, F. (2013) The Hog1 stress-activated protein kinase targets nucleoporins to control mRNA export upon stress. The Journal of biological chemistry. 288, 17384–98

Jakob, S., Ohmayer, U., Neueder, A., Hierlmeier, T., Perez-Fernandez, J., Hochmuth, E., Deutzmann, R., Griesenbeck, J., Tschochner, H., and Milkereit, P. (2012) Interrelationships between yeast ribosomal protein assembly events and transient ribosome biogenesis factors interactions in early pre-ribosomes. PloS one. 7, e32552.

Ohmayer, U., Perez-Fernandez, J., Hierlmeier, T., Pöll, G., Williams, L., Griesenbeck, J., Tschochner, H., and Milkereit, P. (2012) Local tertiary structure probing of ribonucleoprotein particles by nuclease fusion proteins. PloS one. 7, e42449.

 Albert, B., Perez-Fernandez, J., Léger-Silvestre, I., and Gadal, O. (2012) Regulation of Ribosomal RNA Production by RNA Polymerase I: Does Elongation Come First? Genetics Research International. 2012, 276948.

Reiter, A., Hamperl, S., Seitz, H., Merkl, P., Perez-Fernandez, J., Williams, L., Gerber, J., Németh, A., Léger, I., Gadal, O., Milkereit, P., Griesenbeck, J., and Tschochner, H. (2012) The Reb1-homologue Ydr026c/Nsi1 is required for efficient RNA polymerase I termination in yeast. The EMBO journal. 31, 3480–93
 

García-López MC, Pelechano V, Mirón-García MC, Garrido-Godino AI, García A, Calvo O, Werner M, Pérez-Ortín JE and Navarro F (2011) The conserved foot domain of RNA Pol II associates with proteins involved in transcriptional initiation and/or early elongation. Genetics,  84(4), 1235-48.

García-López MC and Navarro F. (2011) RNA polymerase II conserved protein domains as platforms for protein-protein interactions. Transcription, 2:4, 193-197.

Lozano-Velasco E, Chinchilla A, Martínez-Fernández S, Hernández-Torres F, Navarro F, Lyons GE, Franco D, Aránega AE. (2011) Pitx2c modulates cardiac-specific transcription factors networks in differentiating cardiomyocytes from murine embryonic stem cells. Cell Tissue Organ, 194(5):349-62.

Pérez-Fernández, J., Martín-Marcos, P., and Dosil, M. (2011) Elucidation of the assembly events required for the recruitment of Utp20, Imp4 and Bms1 onto nascent pre-ribosomes. Nucleic acids research. 39, 8105–21.

Albert, B., Léger-Silvestre, I., Normand, C., Ostermaier, M. K., Pérez-Fernández, J., Panov, K. I., Zomerdijk, J. C., Schultz, P., and Gadal, O. (2011) RNA polymerase I-specific subunits promote polymerase clustering to enhance the rRNA gene transcription cycle. The Journal of cell biology. 192, 277–93
 

Fernández-Ocaña, A., García-López, MC., Jiménez-Ruiz, J., Saniger, L., Macías, D., Navarro, F., Oya, R., A. Belaj, de la Rosa, R., Corpas, FJ., Barroso, JB., Luque, F. (2010) Identification of a gene involved in the juvenile-to-adult transition (JAT) in cultivated olive trees. Tree Genetics and Genomics 6, 891-903.

García-López MC, Mirón-García MC, Garrido-Godino AI, Mingorance C and Navarro F. (2010) Overexpression of Sng1 causes 6-azauracil resistance in Saccharomyces cerevisiae. Current Genetics 56, 251-263.,

M. Chaki, A. Fernández-Ocaña, R. Valderrama, A. Carreras, F. J. Esteban, F. Luque, M. V. Gómez-Rodriguez, J. Begara-Morales, F. J. Corpas, J. B. Barroso (2009). Involvement of reactive nitrogen and oxygen species (RNS and ROS) in sunflower-mildew interaction. Plant and Cell Physiology, 50, 265-279.

C. García-Moruja, P. Rueda, C. Torres, J. Alcamí, F. Luque, A. Carúz (2009). Molecular phenotype of CXCL12β 3Â’UTR G801A polymorphism (rs1801157) associated to HIV-1 disease progression. Current HIV Research, 7, 384-389.

D. Macias, R. Oya, L. Saniger, F. Martín, F. Luque (2009). A lentiviral vector that activates latent HIV-1 proviruses by the overexpression of Tat and that kills the infected cells. Human Gene Therapy 20, 1259-1268.

M. Chaki, R. Valderrama, A. Fernández-Ocaña, A. Carreras, F. López-Jaramillo, F. Luque, P. Palma, J. Pedrajas, M. V. Gómez-Rodríguez, B. Sánchez-Calvo, J. Corpas, J. B. Barroso (2009). Protein targets of tyrosine nitration in sunflower (Helianthus annuus L) hypocotyls. Journal of Experimental Botany 60, 4221-4234.

Hernández-Torres F,  Pedrajas Cabrera José Rafael, Aránega Amelia Eva And Navarro F (2008) Expression in bacteria of small and specific protein domains of two transcription factor isoforms, purification and monospecific polyclonal antibodies generation, by a two-step affinity chromatography procedure. Protein Expression and Purification 60, 151-156.

Hernández-Torres F, Martínez-Fernandez S, Zuluaga S, Nebreda A, Porras A, Aránega AE, and Francisco Navarro (2008). A role for p38 protein kinase in embryonic cardiac differentiation. Febs Letters 582, 1025-2031.

A. Fernández-Ocaña, L. Saniger, D. Macías, F. Navarro, R. Oya, A. Carreras, R. de la Rosa, J.B. Barroso, F. Luque (2008). Búsqueda de genes implicados en la transición juvenil vegetativa a adulta en Olea europaea L. En Proyectos de Investigación 2005-06 Editor Eulogio Castro, pp.: 115-148. Servicio de Publicaciones de la Universidad de Jaén.

R. Valderrama, F.J. Corpas, A. Carreras, A. Fernández-Ocaña, M. V. Gómez-Rodríguez, M. Chaki, F. Luque, P. Colmenero-Varea, L.A. del Río, J.R. Pedrajas y J.B. Barroso (2008). Implicación de las especies de nitrógeno reactivo en los procesos de defensa antioxidante en plántulas de olivo. En Proyectos de Investigación 2005-06 Editor Eulogio Castro, pp.: 149-186. Servicio de Publicaciones de la Universidad de Jaén.

Macías JN, de la Rosa A, Navarro F, Franco D y Aránega AE (2008). Tissue distribution and subcellular localization of the cardiac sodiumchannel during mouse heart development. Cardiovascular Research. 78, 45-52.

Cécile Zaros, Jean-FranÇois Briand, Yves Boulard, Sylvie Labarre-Mariotte, M. Carmen Garcia-Lopez, Pierre Thuriaux & Francisco Navarro (2007). Functional organisation of the Rpb5 subunit shared by the three yeast RNA polymerases. Nucleic Acid Research, 35, 634-647.

R. Valderrama, F. J. Corpas, A. Carreras, A. Fernández-Ocaña, M. Chaki, F. Luque, M. V. Gómez-Rodriguez, P. Colmenero-Varea, L. A. del Rio, J. B. Barroso (2007) Nitrosative stress in plants. FEBS Letters 581, 453-461.

Pérez-Fernández, J., Román, A., Rivas, J., Bustelo, X. R., and Dosil, M. (2007) The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism. Molecular and cellular biology. 27, 5414–29.

Sergio Martínez-Fernandez, Francisco Hernández-Torres, Diego Franco, Gary E. Lyons, Francisco Navarro and Amelia E. Aránega (2006). Pitx2c overexpression promotes cell proliferation and arrests differentiation in myoblasts. Developmental Dynamics 235, 2930-2939.

Julie Soutourina, Véronique Bordas-Le Floch, Gabrielle Gendrel, Amando Flores, Cécile Ducrot, Hélène Dumay-Odelot, Pascal Soularue, Francisco Navarro, Bradley R. Cairns, Olivier Lefebvre And Michel Werner (2006). Rsc4 connects the chromatin remodeler RSC to RNA polymerases. Mol Cell Biol 26, 4920-4933.

F. J. Corpas, A. Fernández-Ocaa, A. Carreras, R. Valderrama, F. Luque, María Rodríguez-Serrano, M. Chaki, J. R. Pedrajas, L. M. Sandalio, L. A. del Río, J. B. Barroso (2006). The expression of superoxide dismutase isozymes is cell-type dependent in olive (Olea europaea L.) leaves. Plant & Cell Physiology 47, 984-994.  

López-Flores, J. Peragón, R. Valderrama, F. J. Esteban, F. Luque, M. A. Peinado, F. Aranda, J. A. Lupiáñez, J. B. Barroso (2006). Down-regulation in the expression of the rat-liver serine dehydratase during chronic metabolic acidosis. The American Journal of Physiology - Regulatory, Integrative and Comparative Physiology 291, R1295-R1302.

Saniger, M.L., Oya, R., Macias, D., Dominguez, J.N., Aranega, A., and Luque, F. (2006) c-Jun kinase mediates expression of VEGF induced at transcriptional level by Rac1 and Cdc42Hs but not by RhoA. J Cell Biochem 98, 650-660.

Jorge N. Domínguez, Francisco Navarro, Diego Franco, Robert P. Thompson, Amelia E. Aránega (2005). Temporal and spatial expression pattern of a1 sodium channel subunit during heart development. Cardiovascular Research 65, 842-850.

Garcia-Moruja, C., Alonso-Lobo, J.M., Rueda, P., Torres, C., Gonzalez, N., Bermejo, M., Luque, F., Arenzana-Seisdedos, F., Alcami, J., and Caruz, A. (2005) Functional Characterization of SDF-1 Proximal Promoter. J Mol Biol, 348,43-62.

Lopez-Flores, I., Barroso, J.B., Valderrama, R., Esteban, F.J., Martinez-Lara, E., Luque, F., Peinado, M.A., Ogawa, H., Lupianez, J.A., and Peragon, J. (2005) Serine dehydratase expression decreases in rat livers injured by chronic thioacetamide ingestion. Mol Cell Biochem, 268,33-43.

Luque, F., Oya, R., Macias, D., and Saniger, L. (2005) Gene therapy for HIV-1 infection: are lethal genes a valuable tool? Cell Mol Biol (Noisy-le-grand), 51,93-101.

Luque, F and Oya R. (2005) AIDS gene therapy: A vector able to selectively destroy latently HIV-1 infected cells. En Modern Biopharmaceuticals - Design, Development and Optimization. Editor Jörg Knäblein. In Modern Biopharmaceuticals - Design, Development and Optimization. Vol. 2 pp.: 549-568. Wiley VCH. 

Pérez-Fernández, J., Remacha, M., and Ballesta, J. P. (2005) The Acidic Protein Binding Site Is Partially Hidden in the Free Saccharomyces cerevisiae Ribosomal Stalk Protein P0 †. Biochemistry. 44, 5532–5540.